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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158859193_158860556_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158859193 - 158860556
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGCTTGTGATCT
Flanking Amino Acid:
HKNEHARRYLSKATTLERTY
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.7
0.71
0.8
80.2
31.9
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
44.2
-0.3
2.3
64.8
45.6

Associated Gene:

Gene:
CDC16
Ensembl Gene ID:
ENSAPLG00000012294
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012884
158849217 - 158867417
18201