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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158860683_158861398_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158860683 - 158861398
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGTTCCTGATGA
Flanking Amino Acid:
AYFTAAQLMKGCHLPMLYIG
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.7
0.69
0.8
74.1
36
Minor 5ss
39.2
-1.2
2.8
40.9
45.4
Minor BPS
52
0.06
2
69.18
42.8

Associated Gene:

Gene:
CDC16
Ensembl Gene ID:
ENSAPLG00000012294
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012884
158849217 - 158867417
18201