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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158862655_158864666_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158862655 - 158864666
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTAACCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACCCTAACA
Flanking Amino Acid:
NNLGHVCRKLKKYEEALEYH
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.8
0.42
1
62.9
38
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
67.2
0.53
1.7
78.45
37.3

Associated Gene:

Gene:
CDC16
Ensembl Gene ID:
ENSAPLG00000012294
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012884
158849217 - 158867417
18201