About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158877812_158880383_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
158877812 - 158880383
Intron Length:
2572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGAGGAG
5'SS Class:
major
3'SS Sequence:
TGATAAGTAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CAGTCCTGAACA
Flanking Amino Acid:
VPAPRQHWWVENKIVSCCSL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.1
49.9
40.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
58.7
0.2
1.1
51.5
45.8
Minor 5ss
26.7
-2.7
3.7
33.1
44.8
Minor BPS
66.8
0.52
1.5
69.59
42.4

Associated Gene:

Gene:
UPF3A
Ensembl Gene ID:
ENSAPLG00000012944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044465
158877595 - 158892168
14574