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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158880516_158881927_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158880516 - 158881927
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCCTA
5'SS Class:
major
3'SS Sequence:
GATCTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CTTCCCAGAATA
Flanking Amino Acid:
FDGYVFIDNKGLEYPAVVEF
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
61
45.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
69.3
0.43
1.1
71.9
38
Minor 5ss
36.4
-1.5
3.3
47.8
47.7
Minor BPS
52.2
0.07
1.8
66.96
39.2

Associated Gene:

Gene:
UPF3A
Ensembl Gene ID:
ENSAPLG00000012944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044465
158877595 - 158892168
14574