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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158885707_158885797_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158885707 - 158885797
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGAACTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GCATTTTGAACT
Flanking Amino Acid:
YIKNRKLEKQRIREEKREER
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.6
0.55
0.9
70.4
40.8
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
59.2
0.37
1.4
69.88
41

Associated Gene:

Gene:
UPF3A
Ensembl Gene ID:
ENSAPLG00000012944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013466
158882205 - 158892168
9964