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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158887468_158889214_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158887468 - 158889214
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCATATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGCATA
Flanking Amino Acid:
SEGSLKELKEKSQNDSDKEQ
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
100
1.24
0.5
100
0
Major PPT
67.5
0.39
0.9
61.3
39.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
50.1
-0
2.2
73.52
38.3

Associated Gene:

Gene:
UPF3A
Ensembl Gene ID:
ENSAPLG00000012944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044465
158877595 - 158892168
14574