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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158967752_158969041_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158967752 - 158969041
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTATTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATA
Flanking Amino Acid:
LAVTEQNDGYRSLPL
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
41
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.4
0.68
0.9
77.9
35
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
76.1
0.82
1.3
84.11
29.4

Associated Gene:

Gene:
SEPTIN10
Ensembl Gene ID:
ENSAPLG00000012998
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013559
158967737 - 158988866
21130