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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158977065_158977632_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
158977065 - 158977632
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTGGTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTATGTAATA
Flanking Amino Acid:
ARQYPWGIVQVENENHCDFV
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.3
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
58.7
0.2
1.1
58.5
46.9
Minor 5ss
37.6
-1.4
3.2
48.7
47.5
Minor BPS
49.8
-0
2.1
67.55
39.7

Associated Gene:

Gene:
SEPTIN10
Ensembl Gene ID:
ENSAPLG00000012998
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013559
158967737 - 158988866
21130