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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1590336_1607330_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1590336 - 1607330
Intron Length:
16995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCG
5'SS Class:
major
3'SS Sequence:
TTTGTGCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATCT
Flanking Amino Acid:
DPSGLLISVIRTLSTSDDVE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
64.1
39.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.8
0.49
0.9
66.5
35.7
Minor 5ss
28.1
-2.5
3.6
38
47.1
Minor BPS
48.8
-0
2.4
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005852
1507728 - 1607545
99818