Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159055660_159078640_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

159055660 - 159078640

Intron Length:

22981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTCA

5'SS Class:

strong_major

3'SS Sequence:

CCCCTGCCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCCC

U12 Branch Point Sequence:

TCTCCCTTTTCC

Flanking Amino Acid:

IGIFPILYVELNDSAKQLIE

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

77.7

33.5

Major BPS

35.6

-0.9

4.2

77.4

37.4

Major PPT

68.3

0.41

0.8

64.5

Minor 5ss

44.1

-0.6

2.8

56.9

47.3

Minor BPS

43.6

-0.5

3.6

68.23

43.3

Associated Gene:

Gene:

SH3RF3

Ensembl Gene ID:

ENSAPLG00000019711

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019343

159011613 - 159086047

74435