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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159312250_159313460_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159312250 - 159313460
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTCA
5'SS Class:
major
3'SS Sequence:
TGTGTTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATGAC
U12 Branch Point Sequence:
GAGCCAATGACT
Flanking Amino Acid:
KCEPGEEPYMTCGYGTKDED
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
72.3
33.1
Major BPS
54.6
0.12
1.1
47.1
36.1
Major PPT
79
0.65
1
72.9
42.2
Minor 5ss
40.7
-1
2.7
48
42.8
Minor BPS
45.8
-0.2
1.9
61.15
41.8

Associated Gene:

Gene:
EDAR
Ensembl Gene ID:
ENSAPLG00000015965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016670
159311318 - 159335273
23956