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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159313643_159317931_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159313643 - 159317931
Intron Length:
4289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGCCTCATCT
Flanking Amino Acid:
NDAECGPCLPGYYMLENRPR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.5
0.71
0.8
79.3
32.7
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
61.6
0.44
1.9
84.24
42.6

Associated Gene:

Gene:
EDAR
Ensembl Gene ID:
ENSAPLG00000015965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016670
159311318 - 159335273
23956