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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159328142_159329279_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159328142 - 159329279
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GCTTCTTTACAA
Flanking Amino Acid:
TFSPYQHAHKADLSGQGHLA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
55.8
0.18
1.7
64.9
41.7

Associated Gene:

Gene:
EDAR
Ensembl Gene ID:
ENSAPLG00000015965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016670
159311318 - 159335273
23956