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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159329409_159329495_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159329409 - 159329495
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTACATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTATCTTTACAT
Flanking Amino Acid:
YIVKTKPSAQACCKSHSVKN
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.7
0.58
0.9
67.1
38.8
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
58.8
0.36
1.7
74.88
41.6

Associated Gene:

Gene:
EDAR
Ensembl Gene ID:
ENSAPLG00000015965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016670
159311318 - 159335273
23956