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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159329881_159330633_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159329881 - 159330633
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTATCCTTCATT
Flanking Amino Acid:
LTATPAKAAKSENDASSENE
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
75
0.62
1.1
77.2
36
Major PPT
85.4
0.8
0.8
79.4
32.2
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
73.7
0.83
1.7
88.75
36.3

Associated Gene:

Gene:
EDAR
Ensembl Gene ID:
ENSAPLG00000015965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016670
159311318 - 159335273
23956