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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159381258_159382324_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159381258 - 159382324
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
CTTTTTTTTAAG
Flanking Amino Acid:
HRIVTDFVCQGGDITNHDGT
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
80.9
0.7
0.9
86
25.7
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
49.8
-0.1
1.8
59.36
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030067
159380912 - 159386298
5387