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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159382557_159386170_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
159382557 - 159386170
Intron Length:
3614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTCAGAAAG
5'SS Class:
weak_major
3'SS Sequence:
GCTGCCAAAGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAAGAATG
Flanking Amino Acid:
SKRQKKELIKLISKLKNRLP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.3
0.13
1.4
55.9
43
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
47.5
-0.1
1.1
43.6
35.5
Minor 5ss
31.1
-2.2
2.9
42.4
43.9
Minor BPS
47.8
-0.3
2
61.43
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030067
159380912 - 159386298
5387