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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159402972_159404294_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159402972 - 159404294
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
TTCTATGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTGCTCAGAATG
Flanking Amino Acid:
DMQECRSAFESLDRVLHSVK
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.7
0.65
0.9
77.1
36.9
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
46.8
-0.3
1.8
54.37
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038098
159400715 - 159447085
46371