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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159404441_159404814_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159404441 - 159404814
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTATAAG
5'SS Class:
major
3'SS Sequence:
CCTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATCC
Flanking Amino Acid:
WCSCVIETFEEYLESVQDLE
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
69
37
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82.1
0.72
0.7
80.8
24.4
Minor 5ss
35.1
-1.7
2.7
41.1
45.5
Minor BPS
76.5
0.81
1.5
83.42
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038098
159400715 - 159447085
46371