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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159416891_159417720_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159416891 - 159417720
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
CSTCNTKLTLKNKFVEFDMK
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.1
0.61
0.8
74.5
35
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040506
159416776 - 159454057
37282
ENSAPLT00000039024
159416776 - 159468273
51498
ENSAPLT00000038098
159400715 - 159447085
46371
ENSAPLT00000017473
159416776 - 159470015
53240
ENSAPLT00000044909
159416776 - 159470542
53767