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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159417470_159417720_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159417470 - 159417720
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTCTGTTTAACT
Flanking Amino Acid:
CSTCNTKLTLKDKFVEIDLK
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
64.5
0.33
1.1
64
36.7
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
72
0.77
1.7
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009730
159417278 - 159434820
17543
ENSAPLT00000033263
159417278 - 159469451
52174
ENSAPLT00000017232
159417278 - 159479105
61828