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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159420026_159421266_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159420026 - 159421266
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTCCATTAAAA
Flanking Amino Acid:
LAYCETHYNQLFGDVCFHCN
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.5
0.75
0.7
80.7
24.5
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
62.7
0.39
1.7
74.59
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033263
159417278 - 159469451
52174
ENSAPLT00000044909
159416776 - 159470542
53767
ENSAPLT00000017473
159416776 - 159470015
53240
ENSAPLT00000040506
159416776 - 159454057
37282
ENSAPLT00000017232
159417278 - 159479105
61828
ENSAPLT00000039024
159416776 - 159468273
51498
ENSAPLT00000009730
159417278 - 159434820
17543
ENSAPLT00000038098
159400715 - 159447085
46371