Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159422277_159423315_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

159422277 - 159423315

Intron Length:

1039

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAACTTGA

5'SS Class:

major

3'SS Sequence:

AACTTTTGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

AATTAATTAACT

Flanking Amino Acid:

HPDHFNCANCGKELTADARE

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.2

65.9

42.7

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

66.1

0.36

1.1

42.5

Minor 5ss

44.7

-0.6

2.6

49.9

46.3

Minor BPS

65.3

0.56

1.8

82.62

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009730

159417278 - 159434820

17543

ENSAPLT00000038098

159400715 - 159447085

46371

ENSAPLT00000033263

159417278 - 159469451

52174

ENSAPLT00000044909

159416776 - 159470542

53767

ENSAPLT00000017473

159416776 - 159470015

53240

ENSAPLT00000040506

159416776 - 159454057

37282

ENSAPLT00000017232

159417278 - 159479105

61828

ENSAPLT00000039024

159416776 - 159468273

51498