Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159424385_159426966_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

159424385 - 159426966

Intron Length:

2582

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TCTTTCTTACAG

Flanking Amino Acid:

MLFAPCCHQCGEFIIGRVIK

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

85.7

0.8

79.8

32.3

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

56.9

0.08

1.8

63.72

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009730

159417278 - 159434820

17543

ENSAPLT00000038098

159400715 - 159447085

46371

ENSAPLT00000044909

159416776 - 159470542

53767

ENSAPLT00000033263

159417278 - 159469451

52174

ENSAPLT00000017473

159416776 - 159470015

53240

ENSAPLT00000040506

159416776 - 159454057

37282

ENSAPLT00000017232

159417278 - 159479105

61828

ENSAPLT00000039024

159416776 - 159468273

51498