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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159427034_159432255_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159427034 - 159432255
Intron Length:
5222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCCTCTTAACT
Flanking Amino Acid:
QQFPEGLFYEFEGRKYCEHD
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.6
0.82
0.7
81.2
29.4
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
73.5
0.82
1.2
80.65
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009730
159417278 - 159434820
17543
ENSAPLT00000038098
159400715 - 159447085
46371
ENSAPLT00000033263
159417278 - 159469451
52174
ENSAPLT00000044909
159416776 - 159470542
53767
ENSAPLT00000017473
159416776 - 159470015
53240
ENSAPLT00000040506
159416776 - 159454057
37282
ENSAPLT00000017232
159417278 - 159479105
61828
ENSAPLT00000039024
159416776 - 159468273
51498