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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159432416_159478685_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
159432416 - 159478685
Intron Length:
46270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.9
81.8
34.6
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017232
159417278 - 159479105
61828