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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159462341_159468935_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159462341 - 159468935
Intron Length:
6595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTAAATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTCTGCTAAATT
Flanking Amino Acid:
RTSGEACTNLSLLQIQPCPS
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
67.2
0.39
1
63.6
41
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
51
0.11
2.1
70.75
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017473
159416776 - 159470015
53240