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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159469065_159470243_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
159469065 - 159470243
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACGTGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTACCATCAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
57.4
44.2
Major BPS
68
0.45
1
57.8
39
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
36.2
-1.6
3.3
46.8
48.5
Minor BPS
47.2
-0.2
2
64.11
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044909
159416776 - 159470542
53767