About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159485744_159489801_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159485744 - 159489801
Intron Length:
4058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTGTGTTCCATT
Flanking Amino Acid:
EKGKLVAIAQEQRPINASKT
Intron Amino Acid Position:
1668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77
0.61
0.8
71.7
32.6
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
44.5
-0.3
2.3
67.18
44.6

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022380
159485688 - 159512987
27300