Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159488685_159489801_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

159488685 - 159489801

Intron Length:

1117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAA

U12 Branch Point Sequence:

ATTTAGTTCACA

Flanking Amino Acid:

EKGKLVAIAQGEEESTSRPS

Intron Amino Acid Position:

1635

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.7

81.4

32.7

Major BPS

65.2

0.38

0.9

65.5

27.9

Major PPT

87.3

0.84

0.6

85.2

22.3

Minor 5ss

-2.1

3.1

39.6

46.4

Minor BPS

47.9

-0.1

2.5

70.63

41.5

Associated Gene:

Gene:

GCC2

Ensembl Gene ID:

ENSAPLG00000009100

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025348

159488614 - 159520960

32347

ENSAPLT00000021207

159487795 - 159512987

25193

ENSAPLT00000009497

159488614 - 159512987

24374