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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159490004_159490828_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159490004 - 159490828
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAGA
5'SS Class:
major
3'SS Sequence:
TCCTCATGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATGT
Flanking Amino Acid:
TNAILMEQIKLLKSEIRRLE
Intron Amino Acid Position:
1568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
70.1
42
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
70
0.45
0.9
65.5
35
Minor 5ss
35.1
-1.7
2.7
41.2
44.7
Minor BPS
58.8
0.36
2.1
84.24
42.6

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022380
159485688 - 159512987
27300
ENSAPLT00000021207
159487795 - 159512987
25193
ENSAPLT00000009497
159488614 - 159512987
24374
ENSAPLT00000025348
159488614 - 159520960
32347