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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159490969_159491760_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159490969 - 159491760
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
CAATTCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTTTCCAATT
Flanking Amino Acid:
QLLNSPETKPEPSQWQTELS
Intron Amino Acid Position:
1521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
40.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
73.6
0.53
0.9
66.7
38.7
Minor 5ss
38.3
-1.3
3.1
46.2
44.4
Minor BPS
49.8
0.06
1.8
71.91
39.9

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021207
159487795 - 159512987
25193
ENSAPLT00000009497
159488614 - 159512987
24374
ENSAPLT00000025348
159488614 - 159520960
32347
ENSAPLT00000022380
159485688 - 159512987
27300