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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159494520_159496140_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
159494520 - 159496140
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTTCTAAACA
Flanking Amino Acid:
QTETEGAKQEREQLEMVIDQ
Intron Amino Acid Position:
1324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.7
0.74
0.7
76.8
25.1
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
65.5
0.48
1.7
72.86
39.5

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022380
159485688 - 159512987
27300
ENSAPLT00000021207
159487795 - 159512987
25193
ENSAPLT00000009497
159488614 - 159512987
24374
ENSAPLT00000025348
159488614 - 159520960
32347