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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159503762_159504420_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
159503762 - 159504420
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATCTTGC
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTTTATTTACTT
Flanking Amino Acid:
SSVAELQEKIGRLEKESAEK
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.2
57.1
43
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.1
0.74
0.8
82.4
34
Minor 5ss
59.4
0.32
2
70
41
Minor BPS
58.1
0.33
1.8
77.31
39.6

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009497
159488614 - 159512987
24374
ENSAPLT00000025348
159488614 - 159520960
32347
ENSAPLT00000022380
159485688 - 159512987
27300
ENSAPLT00000021207
159487795 - 159512987
25193