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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159508494_159509339_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159508494 - 159509339
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
ASGGADDIIQALTERLDVVL
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.1
0.48
1
72.3
36.8
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022380
159485688 - 159512987
27300
ENSAPLT00000021207
159487795 - 159512987
25193
ENSAPLT00000009497
159488614 - 159512987
24374
ENSAPLT00000025348
159488614 - 159520960
32347