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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159509408_159510451_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159509408 - 159510451
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGAC
5'SS Class:
major
3'SS Sequence:
CTGTTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGCTTTTTACT
Flanking Amino Acid:
LLQKVKSRCTELEKEIEELK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
36.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77
0.61
0.9
76.9
37.3
Minor 5ss
32
-2.1
3.3
43.6
44.1
Minor BPS
59.3
0.37
1.6
76.61
40.1

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025348
159488614 - 159520960
32347
ENSAPLT00000022380
159485688 - 159512987
27300
ENSAPLT00000021207
159487795 - 159512987
25193
ENSAPLT00000009497
159488614 - 159512987
24374