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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159511237_159515903_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159511237 - 159515903
Intron Length:
4667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTTTC
5'SS Class:
major
3'SS Sequence:
TATTTTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTACCTCTATTT
Flanking Amino Acid:
QTQPQVLKQNVQDGGQEMVA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
76.4
33.5
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
81.6
0.71
0.9
77.5
36.5
Minor 5ss
43.5
-0.7
2.8
59.2
38.3
Minor BPS
48.8
-0
1.9
71
40.1

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025348
159488614 - 159520960
32347