About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159515982_159518231_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159515982 - 159518231
Intron Length:
2250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAAA
5'SS Class:
major
3'SS Sequence:
TTCCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
TAATCTGTATTT
Flanking Amino Acid:
MWFEELSRSVNN
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.5
34.2
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
85
0.79
0.8
79.8
32.1
Minor 5ss
34
-1.8
2.8
33.4
42
Minor BPS
48.1
-0
2.2
69.51
42

Associated Gene:

Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025348
159488614 - 159520960
32347