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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159520340_159520489_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159520340 - 159520489
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAGG
5'SS Class:
major
3'SS Sequence:
ATTTTTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
DHSVSPFMRKGVVGDWKNYF
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
0.7
77.3
30.8
Minor 5ss
30.7
-2.2
3.3
40.3
45.4
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
SULT1C3
Ensembl Gene ID:
ENSAPLG00000008870
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009244
159520227 - 159526130
5904