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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159520671_159520865_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159520671 - 159520865
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
AGCATCTTACCC
Flanking Amino Acid:
LYLFYEDMKENPKREIQKIM
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
50.4
-0
1.7
57.65
41.1

Associated Gene:

Gene:
SULT1C3
Ensembl Gene ID:
ENSAPLG00000008870
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009244
159520227 - 159526130
5904
Gene:
GCC2
Ensembl Gene ID:
ENSAPLG00000009100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025348
159488614 - 159520960
32347