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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159522351_159522703_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
159522351 - 159522703
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATACTCCATAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATACTC
Flanking Amino Acid:
PPSFWEQNCKIIYVARNAKD
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
58.2
0.19
1.1
57.4
37.3
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
53
0.07
1.8
69.04
36.7

Associated Gene:

Gene:
SULT1C3
Ensembl Gene ID:
ENSAPLG00000008870
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009244
159520227 - 159526130
5904