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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159522802_159524114_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159522802 - 159524114
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATAAAAT
Flanking Amino Acid:
MPGPSPNGYSGLELAEAMPS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
83.7
27.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.7
0.64
0.9
72.8
37.3
Minor 5ss
34.2
-1.8
2.9
44.9
43.2
Minor BPS
55.1
0.24
2.1
78.39
43.5

Associated Gene:

Gene:
SULT1C3
Ensembl Gene ID:
ENSAPLG00000008870
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009244
159520227 - 159526130
5904