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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159524253_159525958_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159524253 - 159525958
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TTGATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AATATCTAAACA
Flanking Amino Acid:
DLLIATYAKAGTTWTQEIVD
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
80.9
0.69
0.9
77.9
40.4
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
58
0.25
1.7
67.45
38.6

Associated Gene:

Gene:
SULT1C3
Ensembl Gene ID:
ENSAPLG00000008870
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009244
159520227 - 159526130
5904