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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159565958_159566217_R

Intron Information:

Intron Rank:
155616
Intron Class:
major
Intron Phase:
Intron Coordinates:
159565958 - 159566217
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.9
0.52
1
69.4
40.8
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
68.7
0.67
1.5
84.25
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021712
159564264 - 159566785
2522