About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159645015_159648119_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159645015 - 159648119
Intron Length:
3105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CATTTCTCCACT
Flanking Amino Acid:
PIGYSLSLVLGGLFFAKPMR
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
61.1
0.28
1
67
29.8
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
51.9
0.14
2
72.77
44.1

Associated Gene:

Gene:
SLC5A7
Ensembl Gene ID:
ENSAPLG00000008721
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019505
159631008 - 159650910
19903
ENSAPLT00000009077
159630879 - 159653756
22878