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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159648234_159653533_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
159648234 - 159653533
Intron Length:
5300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TGGGCATTAAAT
Flanking Amino Acid:
GLLVGGFTMTATWVGGGYIN
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
93
0.97
0.6
91.8
19.1
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
54.1
0.21
1.9
71.41
44.8

Associated Gene:

Gene:
SLC5A7
Ensembl Gene ID:
ENSAPLG00000008721
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009077
159630879 - 159653756
22878