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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159685619_159686241_F

Intron Information:

Intron Rank:
138179
Intron Class:
major
Intron Phase:
Intron Coordinates:
159685619 - 159686241
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGGTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.6
44.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
1
87
30.8
Minor 5ss
31.5
-2.1
3.8
46
49.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038773
159682680 - 159686937
4258