Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15972671_15973669_F

Intron Information:

Intron Rank:

131592

Intron Class:

major

Intron Phase:

Intron Coordinates:

15972671 - 15973669

Intron Length:

999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

GTATTTGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTTAT

U12 Branch Point Sequence:

CTGCATTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

76.3

0.65

67.3

39.3

Major PPT

71.2

0.48

41.1

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

48.8

-0

1.8

65.93

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020638

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047237

15971952 - 15973799

1848