Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159738523_159739742_F

Intron Information:

Intron Rank:

138165

Intron Class:

major

Intron Phase:

Intron Coordinates:

159738523 - 159739742

Intron Length:

1220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGTCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTAATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTTATCTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.8

78.2

31.9

Major BPS

0.92

0.9

86.2

29.1

Major PPT

84.4

0.77

0.8

81.4

34.9

Minor 5ss

33.9

-1.8

3.3

47.6

Minor BPS

81.4

1.06

1.1

92.3

29.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024307

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024669

159734382 - 159743598

9217

ENSAPLT00000018653

159734382 - 159744233

9852